SNAP-tag® and CLIP-tag™ Substrate Selection Chart

NEB® offers a large selection of fluorescent labels (substrates) for SNAP- and CLIP-tag fusion proteins. SNAP-tag® substrates consist of a fluorophore conjugated to guanine or chloropyrimidine leaving groups via a benzyl linker, while CLIP-tag™ substrates consist of a fluorophore conjugated to a cytosine leaving group via a benzyl linker. These substrates will label their respective tags without the need for additional enzymes. Cell-permeable substrates (SNAP-Cell® and CLIP-Cell™) are suitable for both intracellular and cell-surface labeling, whereas non-cell-permeable substrates (SNAP-Surface® and CLIP-Surface™) are specific for fusion proteins expressed on the cell surface only.

Self-Labeling Tags

SNAP-tag Cell-Permeable

Substrates NEB # Excitation* Emission* ✝ Size
SNAP-Cell® 430 #S9109 421 444484
SNAP-Surface® 649 #S9159 655 676
SNAP-Capture Magnetic Beads #S9145
SNAP-Surface® 549 #S9112 560 575
NEBNext® Single Cell/Low Input cDNA Synthesis & Amplification Module #E6421
SNAP-Biotin® #S9110
SNAP-Cell® Oregon Green® #S9104 490 514
SNAP-Cell® 505-Star #S9103 504 532
SNAP-Cell® TMR-Star #S9105 554 580
SNAP-Cell® 647-SiR #S9102 645 661
Luna Cell Ready Protease #M0473
SNAP-tag® Purified Protein #P9312
NEBNext® Single Cell cDNA PCR Master Mix #E6426
NEBNext® Single Cell cDNA PCR Primer #E6427
NEBNext® Single Cell RT Enzyme Mix #E6425
SNAP-Surface® 488 #S9124 506 526
NEBNext® Single Cell RT Primer Mix #E6422
EnGen® Spy dCas9 (SNAP-tag®) #M0652
SNAP-Surface® Alexa Fluor® 647 #S9136 652 670
SNAP-Surface® Alexa Fluor® 546 #S9132 558 574
NEBNext® Single Cell Lysis Module #E5530
Luna Cell Ready RNA Protection Reagent #M0469
NEBNext® Single Cell RT Buffer #E6423
Monarch® gDNA Cell Lysis Buffer #T3012
Anti-SNAP-tag® Antibody (Polyclonal) #P9310
CLIP-Cell™ TMR-Star #S9219 554 580
RheoSwitch® Cell Line Jurkat #C2009
Luna Cell Ready Lysis Buffer #B8036
Luna Cell Ready Stop Solution #B8037
NEBNext® Cell Lysis Buffer   #E6322
NEBNext® Cell Lysis Buffer #E6428
SNAP-Surface® Alexa Fluor® 488 #S9129 496 520
RheoSwitch® Cell Line Jurkat and pNEBR-X1GLuc Control Plasmid #C2010

Non-cell-permeable

Substrates NEB # Excitation* Emission* ✝ Size
SNAP-Cell® Oregon Green® #S9104 490 514
SNAP-Cell® 505-Star #S9103 504 532
SNAP-tag® Purified Protein #P9312 0
SNAP-Cell® TMR-Star #S9105 554 580
SNAP-Cell® 647-SiR #S9102 645 661
SNAP-Cell® 430 #S9109 421 444484
SNAP-Capture Magnetic Beads #S9145 0
SNAP-Biotin® #S9110 0
Anti-SNAP-tag® Antibody (Polyclonal) #P9310 0
SNAP-Surface® Alexa Fluor® 488 #S9129 496 520
SNAP-Surface® Alexa Fluor® 647 #S9136 652 670
SNAP-Surface® Alexa Fluor® 546 #S9132 558 574
SNAP-Surface® 649 #S9159 655 676
SNAP-Surface® 549 #S9112 560 575
SNAP-Surface® 488 #S9124 506 526
EnGen® Spy dCas9 (SNAP-tag®) #M0652 0

CLIP-tag Cell-Permeable

Substrates NEB # Excitation* Emission* ✝ Size
CLIP-Cell™ TMR-Star #S9219 554 580
Luna Cell Ready Lysis Buffer #B8036
Luna Cell Ready Protease #M0473
Luna Cell Ready RNA Protection Reagent #M0469
Luna Cell Ready Stop Solution #B8037
Monarch® gDNA Cell Lysis Buffer #T3012
NEBNext® Cell Lysis Buffer #E6428
NEBNext® Single Cell/Low Input cDNA Synthesis & Amplification Module #E6421
NEBNext® Single Cell Lysis Module #E5530
NEBNext® Single Cell RT Buffer #E6423
NEBNext® Single Cell RT Primer Mix #E6422
NEBNext® Single Cell cDNA PCR Master Mix #E6426
NEBNext® Cell Lysis Buffer   #E6322
NEBNext® Single Cell RT Enzyme Mix #E6425
NEBNext® Single Cell cDNA PCR Primer #E6427
RheoSwitch® Cell Line Jurkat #C2009
RheoSwitch® Cell Line Jurkat and pNEBR-X1GLuc Control Plasmid #C2010
SNAP-Cell® Oregon Green® #S9104 490 514
SNAP-Cell® 505-Star #S9103 504 532
SNAP-Cell® TMR-Star #S9105 554 580
SNAP-Cell® 430 #S9109 421 444484
SNAP-Cell® 647-SiR #S9102 645 661

Non-cell-permeable

Substrates NEB # Excitation* Emission* ✝ Size
SNAP-Surface® Alexa Fluor® 546 #S9132 558 574
CLIP-Cell™ TMR-Star #S9219 554 580
SNAP-Surface® 649 #S9159 655 676
SNAP-Surface® Block #S9143
SNAP-Surface® 549 #S9112 560 575
SNAP-Surface® 488 #S9124 506 526
SNAP-Surface® Alexa Fluor® 647 #S9136 652 670
SNAP-Surface® Alexa Fluor® 488 #S9129 496 520

* Excitation and emission values determined experimentally for labeled protein tag.
† Colors are based on the electromagnetic spectrum. Actual color visualization may vary.

SNAP-tag®, SNAP-Cell®, SNAP-Surface® and NEB® are registered tradmarkes of New England Biolabs, Inc.
CLIP-tag™, CLIP-Cell™ and CLIP-Surface™ are trademarks of New England Biolabs, Inc.

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